Paul Wighton
Paul Wighton
Hi @pdlloyd, sorry for the lag and thanks very much for your help! I'm a little swamped right now and wont have a chance to look at this for a...
@djarecka, there is a PR for this [here](https://github.com/ReproNim/neurodocker/pull/445), but it could use a revisit. I'm on vacation next week, but will try to look at it when I get back.
I've moved on to using neurodesk for getting FreeView in a container. Ok with me to close.
@maedoc, I have an [open pull request to neurodocker](https://github.com/ReproNim/neurodocker/pull/445) to support compling FreeSurfer from source. E.g the following command ``` docker run pwighton/neurodocker:20220414 generate docker \ --base-image ubuntu:xenial \ --pkg-manager...
Ah yes, it does use pre-compiled packages, for ITK and others, but I think ITK is the only required package. I think it should be possible to replace those pre-complied...
Actually `build_packages.py` is intel only (thanks @buildqa). I have some [old notes for compiling for ppc64](https://github.com/pwighton/fs-ppc64/tree/master) which compiles itk from source
This looks good to me. Though I think we will want a `cohort` or `group` entity so we can create atlases from various cohorts, e.g `cohort-control`, `cohort-young`, `cohort-dementia`, etc.
Thanks @nellh! I can confirm that downloading with datalad is working.
Awesome, thanks @nellh!
I've started working on a container for v8.0. The dockerfile is [here](https://github.com/pwighton/fs-docker/blob/master/freesurfer/Dockerfile.8.0.0) and the container currently lives at `pwighton/freesurfer:8.0.0`. I haven't had a chance to test it yet, and don't...