pvanheus
pvanheus
The reason that this is labeled WIP is that it includes a workaround for the problem caused by pathogen-profiler (the engine behind tb-profiler) writing to a database directory (see https://github.com/jodyphelan/pathogen-profiler/issues/65),...
The upstream fix discussed here: https://github.com/jodyphelan/TBProfiler/issues/430#issuecomment-2977036822 fixes the problematic behaviour and this tool is now ready for review!
I have confirmed that Backblaze S3 cannot upload an empty file, even via the web interface.
This issue seems to involve two different bug reports that supposedly have the same source? I'm the person who reported the problem uploading to Backblaze B2. I can confirm that...
This is how I run it: ```bash docker run -i -t --rm -u 1000:1000 \ -p 4000:4000 -v $(pwd):/opt/app \ -v $(pwd)/.bundler/:/opt/bundler \ -e BUNDLE_PATH=/opt/bundler \ -w /opt/app ruby:2.7 bash...
Apologies, there is an error in my example above... I think it only worked because on that machine I was user 1000. This works, without any chowns etc. ```bash if...
Updating as Jekyll has kept evolving - you don't need to be restricted to Ruby 2.7! As of today (October 2024) Ruby 3.3 works: ```bash #!/bin/bash if [[ ! -d...
A very small data point: `SRR208161.fastq.gz` - a 370 MB file found at https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR208/SRR208161/ SRR208161.fastq.gz transfers at 195 KB/s via normal curl, 510 KB/s using the Globus link (https://g-a8b222.dd271.03c0.data.globus.org/vol1/fastq/SRR208/SRR208161/SRR208161.fastq.gz) and...
This compilation issue is also being seen in packaging `deacon` which uses `ureq`: https://github.com/bioconda/bioconda-recipes/pull/60634 - looking at the `rustls` it seems that they now offer a [choice](https://github.com/rustls/rustls/issues/2395) between `ring` and...
This both updates the kraken2 tool to version 2.1.6 and adds support for custom databases. The custom databases are provided by directory types and because zip files without a common...