pvanheus

> On the question of "nextstrain format", it might be worth adding this to Galaxy. Here is a description of this format: https://docs.nextstrain.org/projects/auspice/en/stable/releases/v2.html and AuspiceJson would be a subclass of...

@aperreault you appear to be running bactopia on `arm64` (based on the warning about the image's platform) which likely implies a M1 Mac. Is this correct? How did you get...

Yes, but how is bactopia (the main shell script) running on an ARM Mac in the first place?

@rpetit3 I had a student hit exactly the same problem on a Linux setup so that `typing-extension` weirdness is not MacOS specific. It only happened once though and I couldn't...

@dirkcuys yes, you're right this work work for any jsonld schema. So should it simply be changed to: ` ``` {% if page.jsonld %} {{ page.jsonld | jsonify }} {%...

Which version of prokka is this? `MINVER` for blastp has been 2.8 since 6 years. The comparison also uses [ver2str](https://github.com/tseemann/prokka/blob/master/bin/prokka#L187) that converts 2.16.0+ from `blastp -version` to 002016 and `minver`...

> @pvanheus I thought this might be a simple upgrade to a new tool version... but it seems not. Looks like this was mostly your work - want to to...

This is because of a problem with the Singularity container. A certain generation of containers was built with a Busybox that had a broken `/etc/resolv.conf`. I have reported this to...

> Do we need a sniffer for this? Maybe not if the files are only created by tools (then the tool will set the correct datatype). What inspired me writing...

I saw the same error (` libtabixpp.so.0: cannot open shared object file: No such file or directory`) in a workshop yesterday. This was using `conda` on a shared system where...