pushtiks

Hi! I'm also trying/testing linseed and used CPMs (from edgeR), TPMs (from RSEM) and also FPKM (cufflinks) matrices. Matrices looked like: transcript_id sample1 sample2 sample3

@keremw, I got an answer from authors to my question via e-mail: "this is not uncommon situation for predictors to give values that don't sum to one - this constraint...

@konsolerr Konstantin, thank you for your reply! I'll also try to force sum-to-one of the proportion matrix then. Could the issue be due to the "spill-over" effect, when the one...

@konsolerr Konstantin, thank you very much for the answers! The picture is a lot clearer now, the "pseudo-proportions" part and importance of correct cell-type number are the pieces I missed....