Peter Ebert

thanks a lot for the fast reply. seems I misunderstood the FAQ entry about `-D` and `-N`, then. Re data sharing: unfortunately, no, I do not have the permission for...

Sorry that took a bit of time, but we have repeated the experiment with the public PUR trio (HG00733 + parents); what do you think of these N50s: ``` N50...

@hugocarmaga can you please make all the bin files available via Globus (folder: see internal slack) that are part of the above experiment? Thanks And please report here when all...

are the data for this trio (which one is that exactly?) public? we could try repeating the experiment to check our setup

Thanks

to keep this alive: we also did the trio-binning using the WashU trio, and the results look ok (@hugocarmaga can you add the N50s here, please?). At least for our...

The line below is given in the README (see point "Getting started") of this repository to go from GFA to FASTA... ```bash awk '/^S/{print ">"$2;print $3}' test.p_ctg.gfa > test.p_ctg.fa #...

Mercury is also quite popular for assembly evaluation: https://github.com/marbl/merqury

Thanks for your swift reply. I checked the assembly size (p_ctg) and the v0.14.2 ones are roughly ~30 to ~50 Mbp shorter than the ones produced with v0.15.2 (i.e., where...

The first test run unfortunately ended in a segfault - since I used a hifiasm version that was checked out a couple of hours before you made the v0.15.3 release,...