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                                            Peter Nguyen

Option to consider last allele as reference in BGEN reader

Alternatively, it could be good to support aligning with a particular reference genome after the fact. More of an "ELT" approach

Vcfanno does not use pipes to delimit multiple annotations for a single ALT allele

That makes sense. If the INFO tag is for the whole locus though, then would it be possible to make the metadata line for INFO/ENCFF171LNJ say `Number=.` (cf. https://samtools.github.io/hts-specs/VCFv4.2.pdf)? It...

Vcfanno does not use pipes to delimit multiple annotations for a single ALT allele

Good suggestion, will do

install_data.py requires more than 30 GiB of memory

Thank you, @davek44 ! Let me play around with the new commit