Mei Wu

Duplicated chrX in male parental assemblies with hifiasm 0.16.1

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Hello 👋 , We've encountered multiple instances with our non-trio male assemblies, where both haplotypes contain contigs that map to chrX. Here's an example with HG00731 (pacbio ccs reads, 33X...

Nanopolish by the encore

2

## PR checklist Closes #826 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

PIPELINE: write tests for local modules + subworkflows

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### Description of feature We should have a `tests` folder with test workflows for local modules + subworkflows 😄 . Not for nf-core/modules because tests are already written for those...