Philippe Rocca-Serra
Philippe Rocca-Serra
```Source Name | Characteristics | Sample Name``` and ```Source Name | Characteristics | Term Accession Number | Term Source REF | Sample Name``` - Will be serialised differently in JSON...
- [ ] raise an error at object creation -> do not allow creation of a Labeled Extract if Label not set or set with empty string as a value....
- [x] use hashlib - [x] use file uri as input - [x] request checksum type from user (default to sha2 or md5) - [x] add 2 Comments[] to each...
BH-2023: discussion about submission brokering to EMBL-EBI repositories of multiomics scenario: 1 ISA with multimodal assays -> several distinct study identifiers, one for each EMBL repository (Metabolights, ENA, SRA, ArrayExpress)...
https://www.ebi.ac.uk/ols4/help The OLS4 API should function identically to the OLS3 API. If you find any cases where the OLS4 API does not function the same as the OLS3 API, please...
fix: add "Performer" field to isatools/isatab/validate/rules/rules_40xx.py @line 344. not picked up by the testing suite (legacy) typical validation error looks like this: {'message': 'Unrecognised header', 'supplemental': 'Unrecognised column heading Performer...
- discussed by @muehlhaus and @cpommier - relates to https://github.com/ISA-tools/isa-api/issues/473 - the idea is to allow referencing of a file structure description (data dictionary of the filed header) from an...
discussion with @terazus and @cpommier, @sbeir, @danielarend, @timmo during Biohackathon Paris 2022 and DenBI Hackathon 12/2022 Follow-up with crosstalks with RO-crate (@stian)
- add a method to isatab.write.py - pd.to_excel(): https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.to_excel.html - one worksheet per isa-tab file. see: https://github.com/nfdi4plants/ARC-specification/blob/main/ARC%20specification.md#appendix-conversion-of-arcs-to-ro-crates requested by @muehlhaus