David Příhoda

Hi @LuisFF, thanks for reporting this. I'll need to think for a bit since it's been a while since I wrote the code :) I would be careful around changing...

Great, would you be up to implementing that behavior in your PR? @LuisFF

Hi @nadzhou and @duolinwang. Is there a version that currently supports Python 3? I see that code in the `MusiteDeep_Keras2.0` directory in this repository still contains python 2 print statements....

Hi @wawpaopao we haven't experimented with other settings or other methods of generating negative sets. You can download our negative samples "GeneSwap_Negatives.pfam.tsv" in format supported for DeepBGC training from this...

You can try it out by drag-and-dropping your CIF file here: https://molstar.org/viewer/

Hi @tadorfer, yes I mean just in terms of making the documentation more accessible. In case 1 it's for programming reference and for ease of iterating over all possible feature...

Hmm, this might work - showing dependencies in bottom left corner and outputs+checksum in bottom right corner: 

Copied from https://github.com/iterative/dvc/issues/1406 If locked -> locked (yellow lock icon overlay?) Else if any outputs changed -> outs_changed (red) Else if any outputs missing -> outs_missing (grey) Else if md5...

Hi @sheljoy, something like this might work: ```python chain = Chain(seq, 'imgt') v_germline_chains, j_germline_chains = chain.find_human_germlines(limit=1) top_v, top_j = v_germline_chains[0], j_germline_chains[0] num_v_matches = sum(top_v.positions.get(pos) == aa for pos, aa in...

Hi @kkhatri99 thanks for reporting. These blank conda conflicts are notoriously hard to debug ☹️ Are you on Windows/Linux/Mac? Can you try creating a dedicated environment? ```bash conda create -n...