David Příhoda
David Příhoda
@danudwary Also please let me know if there's anything specific that you want me to elaborate on in the training documentation.
https://mibig.secondarymetabolites.org/download
Hi @ZhangDengwei, DeepBGC has not been retrained to include MiBiG 2.0 yet. The tricky part is not training a new model, but validating that it works, using an independent set...
One positive thing is that based on some preliminary tests we made, the current DeepBGC version seems to be able to detect the new MiBiG 2.0 BGCs very well, even...
Hi @planctoqueen can you share the full error output and also the output of `conda info` ?
Hmm, not sure what could be wrong honestly. I hope this is not a broader issue. Anyway, you should be able to install the dependencies from conda manually and then...
Hey @alohith this looks like a network issue, can you try creating a separate environment and paste the log here? ```bash conda create -n deepbgc python=3.7 conda activate deepbgc conda...
Hi @ebervilla can you try adding these channels and then running `conda install deepbgc` again? ``` conda config --add channels bioconda conda config --add channels conda-forge ``` From the screenshot,...
Hi @yemilawal it might be related to a recent change in dependencies, a new version should be ready on bioconda soon. In the meantime, please try installing using: ``` conda...
Hi @zagonzalez these warnings are due to the fact that we are dependent on an old version of Tensorflow. We are not planning to upgrade since it would take a...