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@FernandezMathieu With @anton-khodak we got it working using `rstudio-server-1.2.5019-amd64.deb` with the latest `jupyter-server-proxy` and [juvipanda's jupyter-rsession-proxy](https://github.com/yuvipanda/nbrsessionproxy/archive/rserver-again.zip). Relevant parts of our Dockerfile ```Dockerfile # jupyter-server-proxy extension RUN pip install jupyter-server-proxy #...
If you share your Dockerfile perhaps we can find the main differences and go from there. You can find our whole [Dockerfile here](https://github.com/cellgeni/notebooks/blob/master/Dockerfile) _(there be dragons in there)_.
Hi @anemartinezlarrinaga2898 it doesn't look like a explicit CellTypist error, but more of a scikit-learn/OpenMP issue (see https://github.com/scikit-learn/scikit-learn/pull/15020 and https://github.com/ContinuumIO/anaconda-issues/issues/11294). Are you running this on a M1/M2 Mac? May be...
I'm not sure of a workaround for ARM architecture. There may be some useful information for you to try here: https://forum.image.sc/t/napari-tensorflow-aicsimageio-stardist-care-n2v-pyclesperanto-running-native-on-apple-silicon-m1/55051/3 Otherwise, can I suggest you try this on [Google...
Hi @akk01 thank you for using CellTypist! Are you still seeing that error? It may have been a transient network error and if you try again it may work. Can...
Hi @akk01, just wanted to check if you got a response from your admin team regarding this?
Fetched upstream to fix checks. Hopefully workflow will pass all checks this time.
**[technical off topic]** @ambrosejcarr I've made a super naive attempt at this, is this something @brianpenghe would be interested in having? _(don't mind the image not matching the embedding)_ ...
Hi @dfc-1931475 it's hard to tell without the full command you used to launch this. The error is probably on your **counts data** rather than the your meta data. You'll...
Hi @mxiang1, thank you for using CellTypists. Can you check if you can access the URL from a web broswer in the same network? Paste this in your browser: `https://celltypist.cog.sanger.ac.uk/models/models.json`...