pre-mRNA

Hi Sukriti, apologies for the delay. You can try the latest version of R2Dtool, which should resolve this error: https://github.com/comprna/R2Dtool

Hi, we're no longer planning on dockerizing CHEUI, but we can help you set it up if you'd like to run it on your cluster. Have you tried the conda-based...

I'm having the same issue with Dorado 0.5.3 while performing RNA basecalling, using the command: dorado basecaller sup,m6A_DRACH ./pod5/ --estimate-poly-a > ./unmapped.bam My basecalling hangs at 100%. Similarly, the command...

2.98M RNA004 reads, across ~700 POD5 files

Hi, I still get similar errors with default multi-modification usage, but now it's stable once I specify the chunk/batch size, e.g.: dorado basecaller sup,pseU,inosine_m6A,m5C "$pod5_dir/" --estimate-poly-a -r -b 416 -c...

> Models should be downloaded into the cwd and cleaned up if the models-directory isn't set. Are you having trouble? My GPU nodes aren't internet connected, so I need to...

Bumping this.