Pranav Kumar Mishra

icon indicating a website link www.drpranavmishra.com

icon location Chicago, IL icon location Physician-scientist in training. Post-Doctoral Research Fellow at Rush University. I tinker with tech as a fun hobby, which then helps out at work!

Results 2 issues of Pranav Kumar Mishra

Fix: Integration step's labeling of samples

### Why: In the integration section, we looped through all of the csv files and saved the sample names in `adata.obs['Sample']`. However, the sample name was being stored as 'raw'...

lightning dependency critical CVE - Update dependency list, especially for conda which is pinned below the CVE patch

1 comment

conda package feedstock has a `lightning` package dependency of "[lightning >=2.0,=2.0](https://github.com/scverse/scvi-tools/blob/main/pyproject.toml)". `lightning` has a a critical level of CVE reported https://github.com/advisories/GHSA-mr7h-w2qc-ffc2, with a patch in version 2.3.3. Recommend bumping the...

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