Pradeep Rajasekhar

Another one. https://github.com/TheJacksonLaboratory/dask_relabeling

@imagejan Just pinging again to see if this can be merged? Also, in the most recent FIJI update, I now have the older version of this code which was fixed...

What about something like [albumentations](https://github.com/albumentations-team/albumentations)?? I came across this project that uses albumentations but uses it in 3D: https://github.com/ashawkey/volumentations It uses scikit image transforms under the hood and also considers...

Fair point.

looking at the code: https://github.com/BiaPyX/BiaPy/blob/2c3d6cc6aca04ed738e9a201a14b636b5b13d836/biapy/data/generators/__init__.py#L385 should this `if calc_percentiles: ` be `if not calc_percentiles: ` ???

Ok, I didn't realize I had to explicitly provide the lower and upper percentile file paths in the config file when running TEST. So, now I've specified the paths under...

Also, to add the UPR_VAL_FILE and LWR_VAL_FILE were both in same directory as PATHS.CHECKPOINT_FILE..

Hi Sorry, I haven't. Will get onto this soon. Pradeep

Hi @danifranco I gave it a go and I can run it using the CLI and the percentile clipping seems to be working for both training and inference. Thanks for...

Thanks Andre. With normalisation of whole WSIs, is it customary to do that? Also, what is the recommendation for selecting a "reference image" ? Do you select one that has...