Samuel Wein

icon indicating an email [email protected]

icon location Tübingen, Germany icon location Postdoctoral fellow at the University Tübingen. Computational mass spectrometrist, and recreational reverse engineer.

Results 166 comments of Samuel Wein

deb package install conflict with sqlite3

This should be fixed with the merger of https://github.com/OpenMS/OpenMS/pull/8496. @levitsky can you check if you see the issue is fixed in our nightly (https://abibuilder.cs.uni-tuebingen.de/archive/openms/OpenMSInstaller/nightly/OpenMS-3.6.0-pre-nightly-2025-12-20-Debian-Linux-aarch64.deb)? If so we can roll it...

deb package install conflict with sqlite3

Okay, thanks for checking. How about https://abibuilder.cs.uni-tuebingen.de/archive/openms/OpenMSInstaller/experimental/OpenMS-3.6.0-pre-fix-deb-extern-2025-12-23-Debian-Linux-x86_64.deb I just pushed another patch, and it removes the headers from the package.

Improve parseRange_ error messages with parameter names and better guidance

@copilot fix the error: ../src/topp/FileFilter.cpp:793:52: error: use of undeclared identifier 'rt' 793 | if (rt_block_mode != RTBlockMode::AS_IS && ! rt.empty()) | ^ ../src/topp/FileFilter.cpp:859:12: error: use of undeclared identifier 'pc_mz_range' 859...

Improve parseRange_ error messages with parameter names and better guidance

@copilot There is still an issue: https://cdash.seqan.de/viewBuildError.php?buildid=452933

Fix NASE to use average mass for precursor when use_avg_mass is selected

@copilot add tests for the new code.

Use external libraries from Debian repos to prevent deb package conflicts

@jpfeuffer I think this is enough easier than my idea that we should go for it. Are you okay to merge it?