Pontus Freyhult
Pontus Freyhult
I'm not sure what command you used but if running with `docker`, it won't help changing the environment outside. Rather you need to pass the environment you want to be...
I'd prefer leaving this open, it's still broken.
`set -e` might also be helpful to write this in a nicer way. Apparently, there's also some cases where calls are made that are expected to give non-zero return codes,...
Likely, the nf-core slack is much more suitable for this kind of thing. Here it seems bwa-mem2 starts (but fails? Or just doesn't exit? Not enough information here). It's quite...
Could this be the OOM-killer activating for something unexpected? `sudo dmesg -T` should give a hint.
Ok, thanks, so it wasn't OOM (although there were some interesting apparmor notices that might cause issues, but probably not here). But it still looks like some form of stability...
If you haven't received it before, here's your "mandatory" warning that having a system wide image cachedir is generally not a good idea for larger clusters (basically, it makes anyone...