Nikolas Pontikos

Dimension 1 in both shapes must be equal, but are 12 and 24 for 'merge_1/concat'

4

I've downloaded the DRIVE datasets but when I run this: ``` python run_testing.py ``` I get this error: ``` Traceback (most recent call last): File "./src/retinaNN_predict.py", line 111, in model...

Is it possible to add a custom dictionary? For instance, I would like occurrences of VA in the text to be mapped to Visual Acuity?

https://monarchinitiative.org/variant/dbSNP:rs35794310/rs147955325/rs11415565

2

## Describe the problem Search for RS1:p.Leu127Ter in search bar. Suggested link does not work: https://monarchinitiative.org/variant/dbSNP:rs35794310/rs147955325/rs11415565 ## Expected behavior A clear and concise description of what you expected to happen....

HTML needs to be updated - I've seen ``` ``` being used quite a bit - (center is from HTML3 - https://developer.mozilla.org/en-US/docs/Web/HTML/Element/center)

There are loads of functions that are initialised multiple times and also it could be a lot more sleeker (e.g. having a specific Phenopolis NameSpace etc.) This make development a...

Broken variant page. https://uclex.cs.ucl.ac.uk/variant/15-30696461-C-G Division by zero error for ```variant.EXAC.AN_EAS```: ``` Exception on /variant/15-30696461-C-G [GET] Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/flask/app.py", line 1817, in wsgi_app response = self.full_dispatch_request() File...

Too slow to load. Needs investigation. Will be addressed once we ajaxify gene page.

The individual page should load even if variants not loaded in db. The variant tables should also be fetched with ajax rather than loaded in the template.

Add export to csv to /my_patients page

3

This would be useful for export our data and importing it in to DECIPHER for example.

Annotation and extraction of HPO terms from free text on patient page

1

Recognising ontological phenotype terms (UMLS/SNOMEDCT/HPO) directly from free text: https://bioportal.bioontology.org/annotator This would give a list of suggested terms for the patient record which could then be approved.