Polina

Trimming not possible

1

I am using the AlphaFold2 advanced notebook. When trying to trim the sequence I get this error: ``` --------------------------------------------------------------------------- KeyError Traceback (most recent call last) [](https://ox5jwwb24vk-496ff2e9c6d22116-0-colab.googleusercontent.com/outputframe.html?vrz=colab-20220504-060046-RC00_446421109#) in () 11 #@markdown...

blastdbcmd: BLAST Database error: No alias or index file found for nucleotide database

2

## Expected Behavior I want to create `seqTaxDB` with the downloaded `nt` database ## Current Behavior While augmenting the database with taxonomic information there's an error with BLAST+'s `blastdbcmd` ##...

kernel dies when trying to visualize a tree

4

Hello, I am looking through the [tutorial](http://etetoolkit.org/docs/latest/tutorial/tutorial_phylogeny.html#linking-phylogenetic-trees-with-multiple-sequence-alignments) and trying to visualize a phylogenetic tree with the alignment. After running `t.show(tree_style=ts)` in Jupiter notebook I get a message that the kernel...

Issue when parsing the Ranger-DTL2 output, no circos created

1

Hi, I am using MetaCHIP 1.10.9 and there's an issue at the BP step: ``` [2022-07-04 10:53:41] Filtered blastn results detected, filtration step skipped. [2022-07-04 10:53:41] Detect HGT among species:...