Pieter Moris

Updating littler breaks access to shared library libR.so

7

### Container image name rocker/rstudio:4.1.2 ### Container image digest rocker/rstudio@sha256:4aa7cb6c1851ea480b1435fbaab53834d85dff446b21a5f85f0c7ace843850e8 ### What operating system are you seeing the problem on? Linux ### System information - Docker version 20.10.17, build 100c701...

Add information on recommended method of installing Bioconductor packages

18

I'm having some difficulties modifying the rocker tidyverse base image with Bioconductor packages. I've written up my goal, approach and problems more extensively in an issue on littler's github page...

Failed bioconductor package installations do not cause docker builds to stop

3

I've ran into a number of issues trying to install bioconductor packages in a Docker image. Specifically, the two approaches that I've foud for installing bioconductor packages (`R -e 'BiocManager::install("package")`...

Check if flowcell id matches for paired samples

6

I noticed [this comment ](https://github.com/nf-core/sarek/blob/5cc30494a6b8e7e53be64d308b582190ca7d2585/workflows/sarek/main.nf#L946) about checking the flowcell ID for paired samples while constructing GATK read groups. I was adapting the read group code for a custom pipeline and...

Confusing reporting of number of removed short sequences

6

I noticed that the trimming reports do not show the number of too short reads that were removed in the main summary section, but instead list this at the very...