Tim Read

Could this create issues with bactopia_tools looking for files that don't exist?

I think a feature where you can enter a sketch of existing species diversity and only process new genomes that are n % distant from exisiting strains. ie only process...

Thanks! This worked for me. The difference seems to be using pip for pastel install rather than bioconda .

Using conda to install snpeff=5.0 also fixed this bug for me. Thanks!