Paul Landes

I agree. The majority of other packages that use spaCy are up to at least 3.2. As of this writing, [3.4](https://spacy.io/usage/v3-4) is the current version.

Fair enough. Do you have a documented process of how to train the clinical notes model so I can do the work?

Thanks for your links on how to train the model. Also, thank you for writing this software and making it available for the public--it is well written. I have generated...

@swfarnsworth Correct, this was trained on the [n2c2 2018 task 2 corpus](https://portal.dbmi.hms.harvard.edu/projects/n2c2-nlp/). Also, the Clinical BERT embeddings, to be specific (see the [paper](https://arxiv.org/abs/1904.03323)), were trained with 10 epochs and showed...

Update: I have: 1. Renamed the model repo from bert to bert_crf_ and updated the link in my previous reopens in this thread. 2. Fixed the bug in the `bert_learner.py`....

@swfarnsworth Congrats on graduating! Seems like a dream to me at this point. Yes, I totally understand--take the time you need, and there's no reason I can't publish what I...

One idea I had was to reuse the rule based aligner to add in the alignment using the graph and the alignment as the space separated `-`. I started to...

@bjascob Thanks for the great suggestion, but I decided it to do the "right" way anyway. I didn't think it was going to take too long, but its more involved...

@bjascob its only two files. Here's the code that populates the alignments: ```python """Includes classes to add alginments to AMR graphs using an ISI formatted alignment string. """ __author__ =...

Here's the test case: ```python from typing import List import unittest from penman.graph import Graph from penman.model import Model import penman.models.noop from amrlib.graph_processing.amr_loading import load_amr_entries from amrlib.alignments.faa_aligner import FAA_Aligner from...