LPeng

this software had met mistake, i had changed the blastn version, diamond version， how can i solve it ?

3

WARNING: Output folder contains and/or , they/it will be overwritten. [2024-05-09 14:50:21] INFO: Processing ... [2024-05-09 14:50:21] INFO: Extracting target sequences using BLAST ... [2024-05-09 14:50:21] INFO: BLAST settings: 1260675...

比对结束第一步，然后第二步，显示这个，如何解决

1

Error: Unknown argument: "mt_mode" Error: (CArgException::eInvalidArg) Unknown argument: "mt_mode" Traceback (most recent call last): File "/home/meta/miniconda3/envs/args_oap/bin/args_oap", line 10, in sys.exit(main()) ^^^^^^ File "/home/meta/miniconda3/envs/args_oap/lib/python3.11/site-packages/args_oap/args_oap.py", line 97, in main options.func(options) File "/home/meta/miniconda3/envs/args_oap/lib/python3.11/site-packages/args_oap/stage_two.py",...

AttributeError: 'NoneType' object has no attribute 'groups'

1

User input: /home/meta/mdisk/pl/earthworm/fastq/VFDB_database/kofam_database/DiTing-master/diting.py -r /home/meta/mdisk/pl/soil/test_diting -o /home/meta/mdisk/pl/soil/test_diting/out -n 30 -a /home/meta/mdisk/pl/soil/test_diting/fasta 2024-07-16 14:52:32 [INFO ] **************[1/12] Check database*************** 2024-07-16 14:52:32 [INFO ] The KEGG database is set 2024-07-16 14:52:32 [INFO...

Can not found the path of database, I have already download this database and put it into the viralrecall category

3

Traceback (most recent call last): File "/home/meta/mdisk/pl/soil/soil_fasta/test_fasta/viralrecall-master/viralrecall.py", line 735, in status = main() File "/home/meta/mdisk/pl/soil/soil_fasta/test_fasta/viralrecall-master/viralrecall.py", line 730, in main run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo,...