Results 132 comments of Peter Kerpedjiev

Do you think you could send me the original `.cool` file and I can try converting and loading?

Try doing this on your `.cool` file: ``` mv HGPS_P7_5Mb_ice.mcool HGPS_P7_5Mb_ice.mcool.bak cooler zoomify HGPS_P7_5Mb_ice.cool ``` That will create a new `.mcool` file with the correct metadata for viewing in higlass....

I suspect that you hadn't made the file multires and that's why it was missing the `max_zoom` attribute. `cooler zoomify` adds zoom information to a regular cooler and makes it...

You should be able to use the `--no-public-data` option to hide all of the libraries that come from `higlass.io`. Let me know if that doesn't work and I can investigate.

It's an option for `higlass-manage`. You should be able to do `higlass-manage start --no-public-data`.

Must be a bug. This is a high priority issue so I'll try to investigate this week. Thanks for trying and reporting.

Also, would you mind pasting in the exact command you're using to start it? I just tried it at home using `higlass-manage start --no-public-data` and don't see any of the...

Which library do you envision being installed by default? I presume the default use case for this will be Jupyter. @mccalluc did some work moving some of the docs from...

Uh oh, that must be a mismatch between version numbers. We updated the `higlass-python` API which contains the `add_view` call recently but must have forgotten to update higlass-manage to reflect...

Just submitted a PR to fix this: https://github.com/higlass/higlass-manage/pull/43.