Peter Kerpedjiev

When the mouse moves the flickering appears on the first track. https://user-images.githubusercontent.com/2143629/154209117-a86bdc93-092c-4f66-bb2d-56dc2cca511f.mp4

Thanks for the suggestion! Could you elaborate a little more on what you'd like to do? To convert data to cooler, there's the [cooler](https://github.com/mirnylab/cooler) package, which provides a convenient command-line...

That makes sense. Exporting cooler files from R would definitely be incredibly useful. May I ask how large the matrices you typically work with are? Do you store the whole...

@nvictus And adding multiple resolutions can also be done programmatically, I presume? I wasn't sure what the `ctx` variable in `cooler.cli.aggregate.zoomify` was. At some point we need an API to...

Thanks for the input @nservant! To give you a short answer, you can have already binned data in your bedpe file. The `cload` cooler command takes a list of bins...

I'm really happy to hear that you want to make the HiC-Pro available for viewing in HiGlass! This should be relatively easy to accomplish. Because the subject of your questions...

You'd have to extract them to a bigwig file and ingest them separately. Perhaps using cooltools: https://cooltools.readthedocs.io/en/latest/cli.html#cooltools-call-compartments

I would open an issue in the cooltools repo: https://github.com/open2c/cooltools Or you can pop on their Slack and ask: https://bit.ly/2UaOpAe

The word "separately" is largely irrelevant. Just ingest the bigwig file as normal and you can display it in its own track: https://docs.higlass.io/data_preparation.html#bigwig-files

Hi, could you be more specific about what you mean by loading them with "coordinates" and "annotations"?