geva
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pkalbers
Genealogical Estimation of Variant Age (GEVA)
Hello, I tried to use geva to estimate the ages of some rare variants but got empy output. When checking with the log file, I noticed it saying Position not...
Hi, Though the readme file talks about installation, the download is not clear. Does it suffice to download a zipped copy from the Copy code option? I am getting an...
Hello~ My input file has two unphased sites of my focal site. I tried using the "." in the input file as the symbol of unphased sites, but met the...
Hi, I am using GEVA to estimate multiple allele age, could you also provide a example file containing multiple positions, and also different chromosomes. If I want to get age...
Hi, I want to try the conversion by using a genetic map file with following command: `./geva_v1beta --vcf vcfile.vcf.gz --map ./geneticmap_file --out output` My genetic map file looks like this:...
Dear all, I am working on a non-model species and wonder what particular considerations I should take for my analyses with this tool. For example, do the pre-made HMM-profiles apply...
Dear @pkalbers, Can you please advice on the structure of the input data? Lets say I am interested in the age distribution of haplotypes in divergent loci observed across the...
Hi, I was using geva to estimate age of a specific allele, and I got the expected output following the manual, which was excellent. I saw that on your website...
Hello, I used GEVA to calculate allele age, but I have some questions about the result file. Does the last column(PostMode) in the result refer to allele age? Does it...
