pjordab

Results 21 comments of pjordab

fix rsid-based `snp_asGeneticPos()`

Dear developer and users, I am having the same issue: POS2

AssertionError: assert DATA_U.shape[0] == np.sum(np.asarray([x.shape[0] for x in comb_flat]))

Thank you very much for your responses. Please let us know when the meta-format option is available.

AssertionError: assert DATA_U.shape[0] == np.sum(np.asarray([x.shape[0] for x in comb_flat]))

Hi Patrick and developers, Thanks for all your previous answers and help. I have reattempted the same analysis and got the same error when using MTAG on 4 traits with...

AssertionError: assert DATA_U.shape[0] == np.sum(np.asarray([x.shape[0] for x in comb_flat]))

That's perfectly understandable. Thank you very much!

cannot run maxFDR calculations

Hi to developers and users, First of all, thanks again for this tool and for your time. I am currently using MTAG for analysis that contain a number of traits...

cannot run maxFDR calculations

Hello developers and users, First of all, many thanks for your help and previous answers. To calculate the maxFDR in an analysis of more than 4 traits, say 9, I...

cannot run maxFDR calculations

Yes, I'm only using the maxFDRs for trait1.

cannot run maxFDR calculations

Hi again, so what would be your recommendation for calculating the FDR when more than 4 traits are included? Thank you very much! Paloma

Increase in Statistical Power

It is the complete log file, I can send you the original one by mail if you prefer. I only modified the sumstats names. The GWAS n is: 224727 GWAS...

Differences in mean chi2 of the trait of interest and included traits

Thank you very much for your answer!! I'll try to use GenomicSEM. I'll keep you updated.