Peter J. Kohler
Peter J. Kohler
Slurm job is 40542380.
Not sure what you mean by clean and reused working directory?
There may have been. In the past, I have tried to clear that up by adding `rm -r /scratch/users/pjkohler/temp/*` to jobarray.sbatch prior to the eval statement, but I kept getting...
If I type `rm -r /scratch/users/pjkohler/temp/*` into the terminal, sherlock takes a long time to delete the files (>30 minutes). Is there a quicker way?
My approach to manually aligning the images (using AFNI) involved resampling which I had somehow missed. Thus, 32 became 256. I just reran the four subjects after doing manually alignment...
okay ... I have a set of subjects for whom pre-alignment was not necessary that I analyzed using a previous version of fMRIprep. Should I re-run fMRIprep, or can I...
okay. I'll try to run the new version on the other, not pre-aligned data. Hopefully alignment will be successful and everything will be using the same version. Thanks.
I had to pre-align all of my data to get good output alignment with 21.0. I now have good alignments for all of my subjects, except one where 2 out...
Apologies for the late response. I really appreciate your help. By invocation, do you mean the command? `singularity run ${fmriprep_img} ${SCRATCH}/raw/sym_4groups ${SCRATCH}/analyzed/sym_4groups participant -w ${SCRATCH}/temp --participant_label 0024 --ignore fieldmaps --output-spaces...
Note that most runs are fine, but bad alignment is seen for two runs - session 01, task P2, run 2. - session 01, task P3, run 3. Thanks.