pisistrato
pisistrato
Because I needed this to work ASAP, I came up with this workaround, still no idea what it is really going on, but I suspect that it is a timing...
Since it was very strange, I checked the sequences manually, this is what I see ProteinID | SequenceWindow | Start | SequenceWindowFromFasta | Fasta -- | -- | -- |...
Indeed, `ALKLQLDNQY` would be right, but FragPipe reports `AIKIQLDNQY`. To me it seems that all `L` are converted to `I` in the fasta file used to create the SequenceWindow. Case...