qbatch

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WIP: Initial LSF support, based on hacked LSF in original qbatch, untested

6

Based on my LSF support I wrote into a custom maget for an ENIGMA site. Not tested on a real cluster yet, but produces sensible looking outputs. Concerns: How are...

gdevenyi

Student of mine was submitting a job with 500000 (long) lines and "-c 4000" When jobs started, they all failed with: ``` /var/spool/torque/mom_priv/jobs/43286355-1.gpc-sched-ib0.SC: xrealloc: cannot allocate 18446744072881863172 bytes (249856 bytes...

gdevenyi

Investigate mock for better unit tests

2

http://slviki.com/index.php/2016/06/18/introduction-to-mocking-in-python/

gdevenyi

Add qbatch to conda

4

Would certainly be nice to `conda install qbatch`

pipitone

Alternate implementation of default arguments: document in description and set post-argparse

4

See comment here: http://python.6.x6.nabble.com/argparse-tell-if-arg-was-defaulted-tp1528162p1528165.html This means having unset defaults in argparse, and then setting the values after parsing by checking for none. I _think_ this would resolve the chunk_size and...

gdevenyi

http://www.teraproc.com/openlava-caas-guide/

gdevenyi

LSF Support

10

I worked out how LSF works with bsub a while ago for magetbrain reasons, worth adding?

gdevenyi

gdevenyi

gdevenyi

They should be stripped from the job submission.

gdevenyi