Pierre Barbera
Pierre Barbera
**5.30.1 (but should apply to all versions with benchmarking)** **Describe the bug** Inaccurate result for `max_rss` and similar benchmarking variables when program execution time is short, due to low sampling...
Currently the epa-ng process might be killed by the system for exceeding the maximum amount of memory. This can happen with large trees / alignments. We need a strategy to...
For "weird" sequences that don't fit in the tree, or may not align correctly, or are just plain wrong, we have observed a tendency of them being placed on longer...
Especially for this early beta phase, it would be great to have a script to check the basic sanity of the output. This could allow the user to ensure some...
add the ability to detect incomplete runs, and recover where the last one left off
Related to #1, there could be a function for calculating the Kuhner-Felsenstein distance between two trees, as described in [Kuhner and Felsenstein, 94](http://mbe.oxfordjournals.org/content/11/3/459.full.pdf), Equation (1). ``` C++ auto distance =...