piatekmj

Hi Brian, The code I'm testing is as follows: ``` use Bio::Factory::EMBOSS; use Bio::SeqIO; my $genome = 'genome.fa'; my $inseq = Bio::SeqIO->new( -file => $genome, -format => 'fasta', ); my...

They are not very long. See the lengths of the sequences below: 1223259 unitig_9 1087134 unitig_0 934178 unitig_1 660843 unitig_2 453028 unitig_5 312397 unitig_6 114250 unitig_11 80635 unitig_3 66509 unitig_7...

Brian, it seems I was able to overcome the problem by using your suggestion of using sequence objects. ``` while (my $seq = $inseq->next_seq) { $assembly{$seq->id} = $seq; } ```...

pltek is in my PATH indeed. If you instructed me, I could provide some more details regarding that.