phys2bids
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physiopy
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
This moves both in favour of an easier management of the CLI and in favour of a quicker reusability of the pipeline, also letting the centres that are interested (BCBL,...
## Context / Motivation Some of the Exceptions have no type defined. Better defining them would make reading exceptions and testing easier. This issue is a follow-up of [a comment...
## Summary Right now phys2bids.py doesn't have a unit test that checks all the if statements ## Additional deta ## Next Steps Add these test inside test_phys2bids.py
## Detailed Description For multi-run workflows (including the one proposed in #219), the existence of noncontiguous segments (i.e., stopping and starting recording without saving to separate files) can present a...
At the moment, phys2bids assumes that TRs _within_ each scan have even spacing. It also assumes that all the TRs in your file are correct and complete, and sometimes this...
Instead of using "run" to indicate a scan, we could use a different token - "take" or "scan" for instance. ## Detailed Description At the moment, the multi-run pipeline divides...
## Detailed Description `phys2bids` currently only convert physio data associated with fMRI (i.e., data under the BIDS `func` datatype). It would be good to be able to output files in...
Goes together with #23 . One thing that we can do to facilitate the process for the user is to think about "standard cases" that could act as a blueprint...
## Detailed Description There is currently a link to [tarrlab/physio2bids](https://github.com/tarrlab/physio2bids) in the README, but there are a few other tools that I think should be documented and compared to `phys2bids`...
https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw/edit#heading=h.gq2h70xj8umu I think of relevance/needed alignment/collaboration
