phys2bids

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As a step forward toward automatic content recognition, we could add a name matching algorithm to capture the content of a channel. Such algorithm can be heavily inspired by the...

smoia

Automatic recognition of channel contents

11

## Detailed Description The content of a BIDS physiological file contains is described in its companion `.json` file - where an important entry contains the column header. At the moment,...

smoia

Use black formatting rules for linting in CI

9

Closes #324. ## Proposed Changes - Change `flake8` dependency to `flake8-black`. Calling `flake8` in the CI will use `flake8-black` automatically. - Ignore E203 (whitespace before ':'), which `flake8` flags, but...

tsalo

## Detailed Description In cases where triggers are not used or are accidentally dropped, it could be useful to try predicting when scans are happening based on patterns in the...

tsalo

Add badges instead of labels name in the contribution guidelines

1

Following a comment from @tsalo in #315 , it's much much better to put badges for labels instead of their names in the contribution guideline. ## Possible Implementation - Look...

smoia

Remove redundant files in docs and discuss general reconfiguration

5

## Reorganization of physiopy's documentation -> Removal of files in `` phys2bids`` I have pushed a few changes on ``physiopy.github.io`` [PR#2](https://github.com/physiopy/physiopy.github.io/pull/2). Essentially, we want to have a main website for...

sangfrois

Going black (i.e. adopting an _opinionated_ python code formatter)

11

I was already thinking about proposing it, but then @tsalo applied it on his #219 so it's a good moment to propose it. In the line of automating all that...

smoia

Calculate and retain "blockified" version of trigger in dedicated property

1

## Detailed Description This issue stems from @smoia's comment in https://github.com/physiopy/phys2bids/pull/219#discussion_r457513658. Essentially, the BIDS-synchronized run labeling and splitting workflow in #219 requires onsets of physio runs _before_ the workflow is...

tsalo

Update documentation

3

## Summary In the last hackathon there has been many enhacements that render part of the documentation outdated. We need to ## Next Steps - [ ] add documentation about...

vinferrer

Trigger plots don't get saved when on automatic testing mode

2

## Expected Behavior When running pytest on CircleCI, Travis and Azure, the trigger plots should get saved. ## Actual Behavior Trigger plots don't get saved when running pytest on CircleCI,...

eurunuela