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A toolbox for physiological peak detection analyses

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Hello there, I was trying the ``cirrus-ci`` config and realised that there is a fail in the tests in windows: ```` ============================= test session starts ============================= platform win32 -- Python...

Paused

@vinferrer was happily moving the tests to Cirrus CI using the same linters as `phys2bids` when we realised that the linters are not happy at the moment... ...by this much:...

Bug
Good first issue
Paused
Refactoring
Testing

Enhancement
Good first issue
Paused

At the moment, the "selection" of peaks in the interactive plot session can only be done by dragging and selecting an area horizontally - which is great for some signals...

Enhancement
Paused

Currently when editing peaks users are required to drag and select a range to remove / delete peaks. It might be nice to add functionality to allow for simply clicking...

Enhancement
Paused
Urgent

@physiopy/all if there is any contributions or contributor we're not recognising, please let me know before this upcoming Sunday so that we can feature it in the ISMRM presentation. You...

Community

Under @rmarkello's suggestions in #39, this PR removes the cli module from peakdet, as well as the script folder and the two dependencies related to them (`Gooey` and `wxpython`). It...

MInormod-breaking

As discussed in [the July devs meeting](https://docs.google.com/document/d/1hYq42cTY8fYxuSfdQIXV-lN_CUrw4Xos00Dqha7qGUI/edit?usp=sharing), we are considering treating `peakdet` as an intermediate step in most studies' workflows, between `phys2bids` (for wrangling raw data) and `phys2denoise` (for preparing...

Community
Discussion

This happens in Spyder 4 (didn't test on previous Spyder versions), in Ubuntu 18.04 and latest winpython. If we can figure out why, it would be great - starting with...

Bug
Wontfix

[PhysIO Toolbox](https://www.sciencedirect.com/science/article/pii/S016502701630259X) is a MATLAB toolbox for physiological data preprocessing for fMRI. In the manuscript, they refer to a two-stage automated peak detection algorithm. I noticed that the peak detection...

Question