Timothy R. Fallon, PhD

Hi there, Just double checking: Is there something wrong with using the Docker container automatically pushed by Bioconda to Quay.io? https://bioconda.github.io/recipes/funannotate/README.html For newer versions of Singularity, you can directly pull...

Thank you! I can confirm adding `--UTR=off` is a workaround. I imagine the UTR training might be limited to highly curated models like `--species=fly` , but shutting it off explicitly...

Hi there, was this ever addressed? I'd also be interested in this feature & the latest version of gt doesn't appear to have it.

I took a quick look at the (presumed) [source](https://github.com/genometools/genometools/blob/ba61a9536c5e1b1f2f2141f3a0816fe8d5c3fb74/src/tools/gt_extractfeat.c). I'm not totally ignorant of C, but it definitely isn't my strongest suit, and looking at the source, it is definitely...

I think it is a good idea. Markdown formatting would support encoding of links and newlines, and the other formatting would be useful too.

Hello, thanks for the feedback. Regarding verifying a FASTA files integrity vs original downloads: internally I've come up with a `seqkit` based FASTA checksum that pays attention to different levels...

Hi there, Thanks for the great script! I ran into this same issue on a DS1819+ with a brtfs filesystem, where after updating Docker through the script, running ```docker pull```...

Happy to help! So the freshly compiled 0.7.3 works perfectly, however the 0.8.0rc2 binary has the same issue I was seeing with the most recent revision I compiled off github....

Hmm... So it hasn't been working so well, can't seem to get the older commits to compile. Any tips? Following the the guide here:http://git-scm.com/docs/git-bisect $ cd antares $ git bisect...

Thanks : ) So heres my best shot, still some compiling issues: $ git clone https://github.com/arescentral/antares.git $ cd antares $ git submodule init $ ./configure ##configure works, relatively verbose $...