phil622
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phil622
i have the same problem....
this is my command: braker.pl --cores 40 --species=Callo --genome=Callo_polished.fasta.masked --softmasking --bam=Callo1.sorted.bam,Callo2.sorted.bam,Callo3.sorted.bam,Callo4.sorted.bam,Callo5.sorted.bam,Callo6.sorted.bam --gff3
the result of augustus.hints.gtf have only 1000+ genes, and the result of braker.gtf also have no more than 7000 genes.
Hi i meet the same question, and the log is this: