phenopacket-format

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cmungall

Check hypoglycemia quantitative example

1

cbg of 178 - is this correct?

cmungall

Some may use it to describe the complete phenotype of an organism (analogous to genotype) Our model is also: - Condition - Disease - Phenotype Which does not necessarily conform...

cmungall

Per conversation at BOSC, suggest looking at Schema Salad for describing the file format: https://github.com/common-workflow-language/schema_salad Schema salad provides a schema language for describing and validating YAML files with embedded annotations...

tetron

parking lot item, but there will likely need to be a mechanism to get data in phenopackets into CDISC/ODM format and vice versa.

mellybelly

Define mapping from PomBase PAF

7

http://www.pombase.org/submit-data/phenotype-data-bulk-upload-format This is quite flexible and could become an official TSV format for PXF (although the json/yaml will still be canonical) cc @ValWood

cmungall

I think we are going to need this soon.

mellybelly

Ensure molecular phenotypes are representable

8

Things like the impact of a mutation on the affected protein's Molecular Function

cmungall

For example: http://www.ncbi.nlm.nih.gov/pubmed/22796563 May involve linking out to separate database, e.g. metabolights

cmungall

Need logo

8

@jmcmurry

mellybelly