Pedro M. Guillem-Gloria comments

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                                            Pedro M. Guillem-Gloria

segmentation fault at make_msa.sh

Its just insane that these tools (HHsuite) are coded to work with 1.5TB plaintext files. A relational database would solve A LOT of issues.

cat make_msa.stderr

The 65535 number sounds suspiciously tied to a 16 bit integer (or array index) that should be way bigger. Perhaps the number of sequences was never ment to be that...

Not an issue, just an implementation question

Thanks for taking the time to share the details and the spirit of the function. It is much clearer to me now. It makes perfect sense for all sorts of...

Not an issue, just an implementation question

https://github.com/pguillem/RaspPI3-acoustic-pure-tone-canceling

Not an issue, just an implementation question

Great, i just managed to get 4096 bars REALLY fast. The program kept reaching a segmentation fault on the second FFT execution, but i realized it was due to my...

Define a volume from residue list, and select all atoms inside volume

Excellent approach. I'm truly amazed at how powerful the library is. Thank you very much @fredludlow Can these objects be instantiated from the python nglview API? (not to view them...

Function Trajectory.remove_solvent() could have a little Bug

Thanks @davidoskky. Fully agree with you. I don't think Zinc should be considered solvent at all (it's not). Usually this ion is not added to balance the charge (like with...

basic_string::_S_construct null or not valid

Sure thing. Let me get that for you. Thanks :)