pgaudet
pgaudet
+[Term] +id: GO:0140914 +name: zinc ion import into secretory vesicle +namespace: biological_process +def: "The directed import of zinc(2+) from the cytosol, across an organelle membrane, into a secretory vesicle." [PMID:19496757]...
Hi @deustp01 These are very good points, that we should discuss at an ontology call. If I understand what you mean, we could in fact do without all 'transport' BPs...
Can priority of this ticket be increased ? If we have the resources, of course.
@jesualdotomasfernandezbreis Are the terms needed already in MSO ? Perhaps we should directly load MSO ? Pascale
Hi, I am working with Colin to add new SO terms as logical definitions for GO terms. Once this is done we'll re-evaluate the need to include SO in Noctua....
Those are the terms of interest from SO: first I'll add them to the imports SO:0000727 CRM (cis-regulatory module) (is a) SO:0000167 promoter (is a) SO:0000170 RNApol II promoter (is...
Hi @ValWood With @thomaspd we had proposed to instantiate all those in GO (as x motif binding); would you prefer to keep them as extensions ?
See also #23212
@balhoff I think METACYC:RXN-13426 and METACYC:1.14.19.3-RXN are the same? Do you get the MetaCyc xrefs from RHEA or from GO? I cannot find METACYC:RXN-13426 in GO.
@amorgat @kaxelsen Would RHEA consider a grouping reaction for EC:1.14.19.3? CHEBI:139565 - octadecadienoyl-CoA(4−) is a common parent to CHEBI:57383 - linoleoyl-CoA(4−) used in RHEA:47140 and CHEBI:74034 - α-linolenoyl-CoA(4−) used in...