Peter Pruisscher

### Description of the bug When doing rtg vcfeval on exomes, we need to filter the truth sets based on the coordinates of the bait sets, otherwise it will inflate...

Fix retroseq to add samtools to build requirements

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The conda recipe works well, but in the docker and singularity containers, retroseq gives the error: `cannot determine samtools version number`. This PR aims to fix the docker and singularity...

### Name of the tool ngs-bits SampleGender ### Tool homepage https://github.com/imgag/ngs-bits ### Tool description ngs-bits is a collection of tools. SampleGender determines the gender of a sample from the BAM/CRAM...

add_module_arriba_visualisation

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This PR adds the module ARRIBA/VISUALISATION ## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or...

Hi, I have created d4 files both with and without the -Az flags, and it seems that the compression flag leads to dips in coverage in the mitochondria. Below an...

Bug: Incorrect output v 0.3.10 in coverage of d4 vs summary.txt

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Hi, Tested with the singularity containers of mosdepth version 0.3.3 and 0.3.10, same result for both. I run mosdepth on a cram file, with e.g. the options `--d4 -c MT...