peterdfields

I got this same error since CUDA moved to v.12. I think there will need to be an update on the side of the developer team here or a downgrade...

@joshabramson I think so. I did a fresh build with the newest dockerfile. Here's the output where the error picks up: ``` I1223 20:04:51.789108 139688861775680 run_docker.py:255] I1224 01:04:51.788743 139711970813760 run_alphafold.py:191]...

@joshabramson I was able to get alphafold to run by substituting nvidia/cuda:11.8.0-cudnn8-devel-ubuntu20.04 into the dockerfile.

@scorreard Thank you for your message. I haven't tried modifying my PATH variable since I was using the singularity container. Were you using a singularity or did you build the...

It appears to be. I get the following output when executing lastal on the terminal: ``` lastal: please give me a database name and sequence file(s) Usage: lastal [options] lastdb-name...

In case it's useful to diagnose the issue here, when I run `anchorwave proali` the above error doesn't seem to occur.

@baoxingsong Thank you for creating AnchorWave! In the present case, the chromosomes are not named the same as we don't presently have a complete idea about which chromosomal scaffolds are...