Perry L. Wood, Jr

@isaacovercast I have been using ipyrad v.0.9.43 and I have been using the reference flag (#5 assembly method) with a rather large genome (11gb), with a single plate of ddrad...

Here is the output: Step 3: Clustering/Mapping reads within samples [########## ] 50% 3 days, 0:00:18 | indexing reference Here is the bash script: #!/bin/bash #SBATCH --time=72:00:00 # walltime #SBATCH...

Yeah, it seems like it is has a high virtual memory requested. We have some high memory nodes that I can try. I will check out bwa index. Please let...