pellescholten

Results 2 issues of pellescholten

Filtering overlapping repeats for chimers

Hi! I was looking for a way to filter out overlapping sequences of my RepeatCraft output and tried your filteringOverlappingRepeats.R script. However, it seems to have an issue with chimeric...

Short repeats are being merged

Hi, While testing different thresholds in the mapfile I found that shortTEs are still used for merging (https://github.com/pellescholten/repeatcraftp/tree/master/shortTE_test) Based on the following text in the readme file I assumed that...