Peiyao Li

ProteinLigandDataset.loadsequence optimization

1

Hi, thanks for the contribution on this library, especially the TorchProtein part. One suggestion would be loadsequence optimization. In current implementation: ```python for i, (sequence, smile) in enumerate(zip(sequences, smiles)): if...

Uncertainty estimation for multiclass task with customized kernel

1

Hi, thanks for the contribution on this awesome library, I come up with one issue with UQ with multiclass (n_class = 3) task using customized Tanimoto kernel as shown in...

In Ch18, trend analysis required the exact year for each record, which has been anonymized. Could you please provide the data you used for analysis in the Chapter?

How to configure API using Azure OpenAI?

8

Hi, we are using GPT provided by Azure. How should we configure the token for that? Many thanks

[Tutorial required] How to integrate reasoner model into workflow?

1

Hi, I want to know is there any tutorial about integration of reasoner into research workflow? Like some other deep-research?

what is the per residue representation in ESM-C?

1

Hello, In the old ESM2, we use this code to get per residue embeddings at 33-layer: ```python # Load ESM-2 model model, alphabet = esm.pretrained.esm2_t33_650M_UR50D() batch_converter = alphabet.get_batch_converter() model.eval() #...

LiteLLM 使用配置

2

### 🔎 Search before asking | 提交之前请先搜索 - [x] I have searched the MinerU [Readme](https://github.com/opendatalab/MinerU) and found no similar bug report. - [x] I have searched the MinerU [Issues](https://github.com/opendatalab/MinerU/issues) and...

Awesome project!

1

Just want to say this project is awesome!