peggiechien

I requested for 64G and then 128G memory and for both cases the process stops at the same spot. Does it need more memory than that? I'll try the development...

Hi @SeppeDeWinter I'm running into this issue: ``` $ scenicplus init_snakemake --help Traceback (most recent call last): File "/u/home/c/chienp/.local/bin/scenicplus", line 33, in sys.exit(load_entry_point('scenicplus', 'console_scripts', 'scenicplus')()) File "/u/home/c/chienp/scenicplus/src/scenicplus/cli/scenicplus.py", line 1123, in...

Hi @SeppeDeWinter Thank you! I was able to generate the bed files. I reinstalled SCENIC+ and am now running into this: ``` $ scenicplus init_snakemake --help usage: scenicplus init_snakemake [-h]...

Hi @SeppeDeWinter That solved the issue! Thank you! I got snakemake to work now, but am running into a new error in the pipeline. I've updated the config.yaml file and...

Hi @SeppeDeWinter I fixed the temp_dir and am now running into this: ``` $ snakemake --cores 12 Building DAG of jobs... Using shell: /usr/bin/bash Provided cores: 12 Rules claiming more...

Hi @SeppeDeWinter I figured out my issue was the folder structure of the bed files folder - I forgot to put the bed files in a DARs folder. I got...