pedres

Hi, Thank you very much for your quick answer. It works perfectly. The former problem regarding taxon_id and otu_id classification was because I assume that ASV17~ was ASV17 and not...

Hi, I finally was able to solve it following the question and solution posted in thread #240

Hi Zachary, I wonder if the approach I used is the same as running deseq from a physeq object because running deseq from physeq object you get a results table...

I want to look at deferentially abundant ASVs. In fact, yesterday I tried doing it addind ASVs as the last "taxonomic" rank, and it worked (see pdf attached). However, as...

> What happens if you just run > > ``` > OMP_THREAD_LIMIT=128 python3 /mnt/netapp2/Store_uni/home/uvi/ba/mav/conda/envs/SqueezeMeta/SqueezeMeta/bin/CONCOCT-1.1.0/bin/concoct --composition_file /mnt/lustre/scratch/nlsas/home/uvi/ba/mav/vermi_MAGs_binners/temp/vermi_MAGs_binners.choppedcontigs.fasta --coverage_file /mnt/lustre/scratch/nlsas/home/uvi/ba/mav/vermi_MAGs_binners/intermediate/binners/concoct/coverage_table.tsv --threads 128 -m 2500 -b /mnt/lustre/scratch/nlsas/home/uvi/ba/mav/vermi_MAGs_binners/intermediate/binners/concoct/concoct_int/ > ``` > > ? It...

> Hello Which version are you using? Any chance that you are mixing versions (like re-running an older project with a new version of Squeezemeta)? I am running version 1.5.1....

Maybe related with this, after running sqm2tables.py vermi_MAGs_binners vermi_MAGs_binners/results/tables and try to load it on R. It gives me this error: vermi_MAGs_binners

> Not necessarily, this is a different bug that was fixed in v1.6.0. Can you update to v1.6.0 and re-run the project? I will try it later because in the...

Hi, I am running version 1.5.1. It was a "fresh" run. I had to do only a restart , which started from step 14 Javier Tamames ***@***.***> escribió: > Hello...

> > I will try it later because in the server that error does not appear when using loadSQM. By now I have run sqm2tables.py and then loadSQMlite pointing to...