Piero Dalle Pezze

Thank you, @abhi18av , I downloaded the fully-bundled distribution and called it directly to execute my pipeline, but for some odd reason I get the same error message. Interestingly, nextflow...

I cancelled the whole dir `.nextflow` and rerun my pipeline: ``` # rm -rf .nextflow/ # cd - #/app/pipeline# nextflow run . CAPSULE: Downloading dependency org.multiverse:multiverse-core:jar:0.7.0 CAPSULE: Downloading dependency ch.qos.logback:logback-classic:jar:1.2.9...

I believe I found the issue, or at least a way to by pass the issue. This was my original code, which works when the file is local. ``` import...

Thanks @cgpu , I think you are correct.

This seems to work, although it is a bit cluttered. ``` withName:my_process { container = "${env.MY_DOCKER_IMAGE}" cpus = "${env.K8S_PROCESS_CPU}" memory = { "${env.K8S_PROCESS_MEMORY_HIGH}" as int * 1.MB * task.attempt }...

First draft of thresholds. - GitHub branch: `mod_thres` - Threshold description: `Help/3\ Analysis\ Modules/` - Configuration file: `Configuration/limits.txt` ``` # BamQC configuration file #################### # MODULE SELECTION # #################### #...

Merged to `develop` branch. See PR #32 .