Paolo Di Tommaso
Paolo Di Tommaso
This annotation allows custom `Collection` and `Map` objects to bypass the default Groovy format and equality methods ie. `toString` and `equals`.
The capsule docs web site is not more accessible. http://www.capsule.io/ Is there are any chance to restore it or to have access to any other copy of the docs?
On file system not supporting File lock primitive Capsule hangs trying to opening a lock. A better strategy to use a timeout and throw an error if the lock cannot...
This commit fixes the issue when parsing the version line produced by Java 10 and later. It also adds a small unit test to keep check the regexp is working...
Capsule fails to recognised version string produced by Java 10 (and later). In a nutshell the version string produced by Java includes a date string, e.g.: ``` $ java -version...
Java 9 allows the use of the `--add-opens` command line option multiple times specifying different package names. However when invoking Capsule with more than one `--add-opens` option only the last...
### Rationale The configuration file is a key component of the Nextflow framework since it allows workflow developers to decouple the pipeline logic from the execution parameters and infrastructure deployment...
Try ``` process foo { input: path x from '/some/data/foo.txt' output: path '*', includeInputs:true into foo_ch """ touch file.txt """ } foo_ch.view { "foo: $it.name" } ````
https://github.com/nextflow-io/nextflow/blob/e85fcc8b4959d6e34c59e98961d3a835b2c81951/modules/nextflow/src/main/groovy/nextflow/processor/TaskProcessor.groovy#L1439-L1446
### Summary The goal of this enhancement is to allow users to propagate label/tag annotations to the corresponding cloud execution platform. This is a recurrent request from Nextflow users. See...