Przemysław Decewicz

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icon company University of Warsaw icon location Warsaw, Poland icon location Asst. Prof. in Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw

Results 3 issues of Przemysław Decewicz

Feature Request: show gene label only for genes creating clusters

Great job with a tool, it's very nice and handy! Would you consider adding an option to show gene labels just for genes that actually created clusters? In case of...

Impossible to use training sets kept in other location than INSTALLATION_DIR

1 comment

I noticed that the below check forces users to keep their retrained reference datasets in INSTALLATION_DIR/PhiSpyModules/data directory https://github.com/linsalrob/PhiSpy/blob/540fbf2548cd6580a6fd9d0a8e003226b1044710/PhiSpyModules/classification.py#L34-L36 The same will happen with kmers file within makeTest.py and makeTrain.py https://github.com/linsalrob/PhiSpy/blob/540fbf2548cd6580a6fd9d0a8e003226b1044710/PhiSpyModules/makeTest.py#L16-L20...

enhancement

[Feature request] Handling mapping temporary files directory

1 comment

Hey, the temporary/partial bam files are created in the directory where I run phables rather than in the output directory. Do you think it is possible to enhance that? `*0001.bam`,...