Peter Countway

I'm having a similar problem with AssignTaxonomy using dada2 v. 1.10, the pr2 v.4.72 reference database, and the associated data for the metabarcode tutorial described here: https://github.com/vaulot/metabarcodes_tutorials/tree/master/R_dada2. All was working...

Thanks very much for the simple explanation Ben. I will say that IdTaxa was very fast and seems to agree well with the results of assignTaxonomy for known cyanos, but...

Hi Ben - Your R code worked to pull out the chloroplast ASVs and write the new seqtab.nochloro table, but I lost the sample names that had previously populated the...

> Hi Peter, > What I'd suggest is to store the samples names as the rownames of the sequence table. This keeps the matrix format, and will keep the sample...

> I'm confused about what is going wrong at this point. Can you clarify? Maybe with code that is reaching a point where things aren't working as expected. Hi @benjjneb...

Hi @benjjneb, The batch *.R script for submitting dada2 jobs is attached - Note: I had to add the .txt file extension to the attached scripts in order to upload...